Scaffold Ga0211659_10049683

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10049683
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F024797	Metagenome / Metatranscriptome	204	Y
F051263	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100496832	F008425	AGGA	MPKKDITYKQFIAHMDKGNKVYMKKPKSWQKCWFWWESKKDKWFLNKAFDQRKDGRVEPEPSVWITAKDMEHHMDHMSRQGYKYHIDE
Ga0211659_100496833	F024797	GAG	MHIKINTNMSEFFRSQMGRKLLDGDIPKLVNVLERIAIQMEKKNTLEEKRFKLDEKLRKLQIKETNLNIIGPNKNA
Ga0211659_100496835	F051263	N/A	MSISNFKDFGLNEEHEFNPNETKERLKRREQQNIERFRAAQDREDPFAVEYYQLRISIDKLDLKKLEYQTKIHQLKQKYGK