Scaffold Ga0211659_10046426

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10046426
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2066
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018196	Metagenome / Metatranscriptome	236	N
F092191	Metagenome	107	N
F099992	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100464264	F092191	GGAGG	MKLKQIVDITKILSDRKVPDDVIKFLDEEYYSVSKKQNIKFGDMDLLHYIRVNIKDHKNLWKSYNEVDDKLHKIRQIMED
Ga0211659_100464265	F018196	AGGAGG	MKPEEIKKAVEYKQGHFNMVQYILREKPEWSISVYDIEEDRFPVEKSKNYEEIRKAIKDYQTEIVCYSKEDKRIGWAWFIPYNETDEDIVSDYSDTLTLNKWAKQFEDLHKQLEVK
Ga0211659_100464268	F099992	GGAGG	MIQVQLNLPLYDNNGKSVKKAHRQLEVELCSKFGGCTTSSGRGKWLDKGKLYNDSLNIYQVAIDKKFKNLFIKIAKKYGIETKQLAIYTVINGKVKIINL