Scaffold Ga0211659_10014377

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10014377
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3929
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016475	Metagenome	247	N
F080235	Metagenome	115	Y
F094535	Metagenome	106	N
F102064	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1001437710	F102064	AGGAGG	MKYLIIRKFHIQGSKMKADYHVEQASDNLALANKKLVALNLLNEDNKNYSFHIVELNEDVLVLTEDMQVA
Ga0211659_100143774	F016475	AGGA	MYKTIYKTYAVDNADIVRMSAQGHTEKESLEFCKMDLINDQARKEIKDYWNLKKFRFETIIVDNK
Ga0211659_100143775	F080235	N/A	MIIDKNNEGAWRISDIINGYWETKVYYFYNKKEAIKLFRKFRKDNKNV
Ga0211659_100143776	F094535	N/A	MNNKSLYNQFFLKMGPAACELATDPDFIRSTWCGPGVSSKSFKPNHDPRTEKEYLFFYFMNKEQATSDRVQAKNSQAKRGTFN