Scaffold Ga0211659_10012651

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211659_10012651

Scaffold Ga0211659_10012651

Overview

Basic Information
Taxon OID	3300020404 Open in IMG/M
Scaffold ID	Ga0211659_10012651 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4217
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.254	Long. (^o)	-85.2248	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038274	Metagenome	166	Y
F102057	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1001265114	F102057	GGAGG	MEQLLNLINEIASNDEMETVIDAIKKKQKELKAELTLKALKSFEVGDRVLCNARDGVHEATITKINRTTADIEIGKDKYTAPLSILEPMEVA
Ga0211659_100126514	F038274	GAGG	MTKEYILDKLSGEYVLVCSDSTRPTIRLGTDDLEVAKKRATPYMQFND

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