Scaffold Ga0211659_10011017

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10011017
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4534
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002445	Metagenome	558	Y
F010922	Metagenome / Metatranscriptome	297	Y
F025008	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100110176	F025008	N/A	MKICSVIHGDCLPEYNAGEHETWYDCAAVGTMMTASALSEIGPDLVNQNKIYVTFKCNAGVGA
Ga0211659_100110177	F010922	GAGG	MGKYRTPFANNDVIHLIEQNKEPEQKLWIAVLAKAFDDAFYSTDDRAALEALSWIKHGSDFNYVCGLAGRDPNYVRKRMLDKVIQREATILAEHKRIKTGVNNIIQLKKRGPVPGTVKKVYDYKWLPKQKHDYVDR
Ga0211659_100110178	F002445	N/A	MTINGCRNRNMIMSTGKRICKDCKGNGYLRTEMNTIVQCLTCWSEGEIDESIWARNYDPIIPDELQSTQKDD