Scaffold Ga0211659_10009961

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10009961
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4785
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F023113	Metagenome / Metatranscriptome	211	Y
F047067	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100099613	F023113	AGGA	MPKKPQPDKMPKPYIEDGNIEAHIIADMLRIESITAELREFKDTTKTRLDKLESWIVAIVGLTFTTLVTTVVGLLMKVLXD
Ga0211659_100099616	F047067	AGGAG	MAQTKGEGKGVAEFATGTLISRHNLLAVLVDTGADLRTEDDAPFEAVERALGIIQPLMYEITDDNSGKIHCIVDGSQFDASAVQAQLQAIGTQEANSYSFASASVTLGTGMTIS
Ga0211659_100099617	F010848	AGGAG	MAQADRRAAAAGEFIGKDVFLKSFQQQAGNISASQLTALVSSVQSLNLTVLKVGDFTAGSQDTVNFILEGADNLANGDLAGHVIGDVSF