Basic Information | |
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Taxon OID | 3300020404 Open in IMG/M |
Scaffold ID | Ga0211659_10004168 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7624 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_102 | |||||||
Coordinates | Lat. (o) | -5.254 | Long. (o) | -85.2248 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006793 | Metagenome | 364 | Y |
F016820 | Metagenome | 244 | Y |
F037769 | Metagenome | 167 | N |
F047122 | Metagenome | 150 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211659_1000416810 | F047122 | AGGA | MKCPKCKRKAKASATKFIEYSHAQRRIRTCECGFKFTTYERIEADKQDLGQHSKQKKKEYYRKVLKELIDDLEGRTYLEKPKDSTIWEGV |
Ga0211659_1000416813 | F006793 | GAG | MTNNRSNNEQMEERINYAADQLAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVAKKRKKKYGDLDALDNSDMPF |
Ga0211659_1000416814 | F016820 | N/A | MTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKAALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPKDIFEKCEDGFCPMPTPQTQEVS |
Ga0211659_1000416816 | F037769 | GAGG | MSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPAPNFNATAPNDVKDYSANLWQARKCLSDAKKLISATALTPKDYNNQDDFQDALLHRLHLAEHFVSINKYIDEHLDYAKSHIPPQTS |
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