Scaffold Ga0211659_10004168

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10004168
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7624
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N
F047122	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1000416810	F047122	AGGA	MKCPKCKRKAKASATKFIEYSHAQRRIRTCECGFKFTTYERIEADKQDLGQHSKQKKKEYYRKVLKELIDDLEGRTYLEKPKDSTIWEGV
Ga0211659_1000416813	F006793	GAG	MTNNRSNNEQMEERINYAADQLAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEVAKKRKKKYGDLDALDNSDMPF
Ga0211659_1000416814	F016820	N/A	MTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKAALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPKDIFEKCEDGFCPMPTPQTQEVS
Ga0211659_1000416816	F037769	GAGG	MSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPAPNFNATAPNDVKDYSANLWQARKCLSDAKKLISATALTPKDYNNQDDFQDALLHRLHLAEHFVSINKYIDEHLDYAKSHIPPQTS