Scaffold Ga0211659_10002995

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10002995
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8985
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009889	Metagenome / Metatranscriptome	311	Y
F012934	Metagenome	276	Y
F036974	Metagenome	169	N
F037984	Metagenome	167	Y
F042076	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1000299510	F037984	N/A	MNRTETLELLIEIQEAIEHFEKRIENAEWSNGIGLGLEFPNINKKNIHNIVIYTMCIGRLNERFTKQLNKLK
Ga0211659_1000299512	F009889	AGAAG	MRIYSLICVLTLFSCSANYHYRKALKKGLEPLISSDTIRIATIDSIPVVKHDTIVYEKYFSSKDTIVHYQNVFVPKTRLETRIEYKIHRDTIRQVTRIEVQKAKASKKPNYMWLIIGLCIVGGFLFIVGKVVNKYV
Ga0211659_100029953	F012934	N/A	MNTLEILKAKINLKTTIIKFKASLEELVEKHEGRTDLITSMKESLEDIEHFNSIFMKFEEEYYLECKANLRNQIIIAEHKHEIDKLKEIINDAKLEL
Ga0211659_100029958	F036974	N/A	MNDPFKLEFWDNFNDSLYFDYLLKREEMLNTYRITYKQYAGSDTNAPVSYAIKYLKAYNKHDAINAFKLWKGLIIKVELCD
Ga0211659_100029959	F042076	N/A	MKGEIEIFKNEDDIVEFGIHDTEFRVCIETETYWQEESVSFNGFTDEIQYEEHIETVTFVRMDTLECHGTMYYSKQDICSELERMLNEDN