NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10002207

Scaffold Ga0211659_10002207


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10002207 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10464
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017050Metagenome / Metatranscriptome243N
F018269Metagenome236N

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100022074F017050N/AMGKLVSGYLWAWTEWEAGKKSMQTLKKFYPDADLFINVDYDGDIENYTKAGKEIGATVTRNKFQIGYPGNFGGRNIGYEHWTKEKAVEWLKGIYDACKKTDSKYIMLFEEDDFVLKPISILGEEFSMAIHPTVPSPTGRMRANYIPQQYFDYSKSVGGVDNCPGYASGGGTIFNRLQYMDSYERALSLYLENFDDYCKINKIYGWQDFLFQYVMMLAGYEIIQNTKLCEHWEVPNYEELGIEILTACKDHNLIKL
Ga0211659_100022077F018269GAGLVAKRYKMKIGINLVGVSYNNAISGGRLRNYEDAIENFYKYIVDPFRENGHEVTFYLYSYENEKQDKIVNDYNPCIKSQFVKPDYNKLGGGDKVSEGYKVMTVSYLNSLDQLKNEDLDLVISTRYDIKFFQNPFEIYNYDFEKMNFLWREPEYMHLPIVNDTFLVFPYKMLDNVIKSIIEMEENPPHGVNTAMHNWYLPMVNQVGEDNVQWVDDRFRTAIQNELYKLTRKE
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Biomedical Sciences Research Center "Alexander Fleming"
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