NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211659_10002144

Scaffold Ga0211659_10002144


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10002144 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10619
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009463Metagenome / Metatranscriptome317Y
F012129Metagenome / Metatranscriptome283Y
F013249Metagenome / Metatranscriptome273Y
F077193Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0211659_1000214414F077193N/AMTHLESLNLRYNQLDQELKALESRENRLYYRGENQKKLMLKKAFESFSHDKFQINVSSVERVTLSPKGDNYNGLVEYSLDTRWRSDEAERIQRSRLNHNGSYFYNNEDNNFNQALVESEARMEFMKLVTEKDEQIQSDWLAIDEKYSDLRSKFWDKLKDLRSAVNDASRDISKFEEQAEMEKLENKEGISFKSKDGHSLPGLDVRFDWRIGQIKNIRVVDKTPTGKSVDLEVIRSWRRWDDKKDQYIKEDKVEVFPKVRFDKVKKLLRNARYNQLIVQ
Ga0211659_100021447F009463N/AMEKVKLTDILEGDYSKNVNYTDDTAMYDPLHEDGDDQQGMLKYTTTIDGRKYKVNFDVNKNPTKKGIKVKFFPLDDSGIEIPNPSPEQLAQLQNDVATKLAPKFNDFRLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKK
Ga0211659_100021448F013249N/AMGKRKLLNLKVIGHSPKLLNEFINDNKSNIFKETFSGIKHAIRQNKDTAEICSVNTDIAIATIAKKDWENALSSSLGYFESMDQYEMCGDINYTLKLLRNARSTKQPKTISGSATTS
Ga0211659_100021449F012129N/AMPDPLNNLKQSLDQLLQADTSIKRKNRKIYDQKKELFINLINQFETSITRSYLMEKDFKVDLSKYEENFYQVIDSLILLAFGKQIYEILSFYFYDRYNPDGTKNSIVIQETDEEVQLDNVEDLWDIVVSINPDIFNEKR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.