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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020404 Open in IMG/M |
| Scaffold ID | Ga0211659_10002140 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10630 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (31.25%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_102 | |||||||
| Coordinates | Lat. (o) | -5.254 | Long. (o) | -85.2248 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002215 | Metagenome / Metatranscriptome | 582 | Y |
| F003751 | Metagenome / Metatranscriptome | 470 | Y |
| F004325 | Metagenome / Metatranscriptome | 443 | Y |
| F072439 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211659_1000214012 | F003751 | AGG | MATYKSDAGAILEPGNQINRLSSFNHEGVKGWPGVEAFEQIGFVKINNASADKASFKSFDITVPSPDRRVSDRVRDDRTTLVVKASSARPAYVYGASIALAQDDPSGGLPSFPASPITADLVGTNTEVLLLGPNNSGSPFGVPSTQQNGLAAASSSIAFSGTTIAQGTGAVTTGKLPFWTVVTGGGITAANAANSMMYKVTADTTFKVFNVNAITDTSVNGDGVSISADDITAGKAAYLVCRVNYLRPAAEVAWSDISSFIDFASQVGGTDS |
| Ga0211659_1000214015 | F004325 | N/A | MKHKKASATEKADKFLQSIGTAGGAIGSPQLIGFGGMDTMSQVAAGNRDEYANIRMKEGDTRIVEGAKMPSDLDASYLKLNLPGSPLPANGLLVPQNLRAAERNQDMIGVNEQMFLAQYLPAAGLSQLPVGQPPLESKKGKK |
| Ga0211659_100021404 | F002215 | N/A | MEPQVIAAIISGSIGAFAGITRALGNFNKKLDRRFENVEKNVEKLKYEVLHDYVLKEDFLREMQAVHSKLDRILDHLLNK |
| Ga0211659_100021409 | F072439 | N/A | MVLPTTKLGYTLGVKRDRDVISPRERQKASPFKGRRIRMAGEKRIDLFAVRPDEAPFSYTKGTNLPKRFTQTLDIPIDREEED |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |