Scaffold Ga0211659_10000945

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10000945
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15705
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033639	Metagenome / Metatranscriptome	177	N
F051947	Metagenome / Metatranscriptome	143	Y
F089555	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_100009453	F033639	AGGAG	MSYSTSGTISEVLIGTGVLYIKDASTANLNFPGNDSNNFDNPTAMTVAWDQVGYSEDGWTLEVDKTFEDVMVAEELDPIKTLKSAQEVRLTGELAQASLTNFQVAMGGGSTAANELGAGDAGAAGTTVSGYHTFKPPTSDTFTEFALVLHADGQAGSDRQFRIPRAVNTGSFAMAHQKAPAKVTLATEFKLLVPESTGLNVGSDAKGNYYLFVVVENRNDSDELDIN
Ga0211659_100009455	F051947	N/A	MGIRKVGVRHHESMKFPPDAEIIFREWAVNNTSITNVCSTRVATRLPRNATLPFLTFFVAGGSMVSPKGDAAIGAVTIQVNAFAGRWGGGTSSQPDYATAYQLANGVAEASFKTAKTIVHTTSTATKAVIYGFDILEMPERIEETDTGLGHYQLSLSMYYRGLD
Ga0211659_100009457	F089555	N/A	MPLRHKLLPETATVQTVSDTNIDERGLPSDNWANTFTNVKCKFESLGAEEDREGRNTTIETFNVYIEKGVSIVPGDRLVRGSDLHEVVMIQPVLDRYGVECYKRAQTFVSK