Scaffold Ga0211659_10000917

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10000917
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15940
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (90.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007645	Metagenome / Metatranscriptome	347	Y
F009922	Metagenome	311	Y
F020608	Metagenome / Metatranscriptome	223	Y
F034356	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1000091723	F034356	AGGAG	MTHNELRKGMRVQLTPIPTISNLPRFAIVMDNMKGITRMVHIEENNGYFGDMGSVYVNEIEYVLFDNDMPEPVEISEAHQNKLDSLLKIHWG
Ga0211659_1000091725	F007645	GGAG	MSKIVYGKRDTATVVSIEKAPHSIQSLWTKANTLGVNIMRVRANKRRYDIQTGETFLGYHGGKVSIYSQKDNPSRPLYFVRPTPLGKDNKGMQILEVADNIDVQDTFNKLARYEYFMTNSLFARITLLFRRVFG
Ga0211659_1000091728	F020608	GGAG	MKIKCTSPNGKSNMQTIKDSKIPLTKFNSFDKMERYINELGFIYKEQNAFKEDRSITYRHKNNKKHIFVKSTFDYFTPVSMEMGTVWTVQEF
Ga0211659_1000091729	F009922	GAGG	MENTFNINDFDKDRHATPASFPQCRAIGYKFAKKGTVMNWRLQKQIQGCMYGLAKENRLTFKKADSLLKGKTLPKVYFDKIKLYLDQKDS