Scaffold Ga0211659_10000393

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10000393
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24524
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059124	Metagenome	134	Y
F072426	Metagenome	121	Y
F080234	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1000039311	F080234	N/A	MYILYLLILFIIILSYNSEGYINHIYDSNKVRSNEPDDIQYYACRQDKFSPGYPFQKYPNSNYRIKKNMVSTPQKGAFSAFLDSHNIRTYDHFYHAPICEDDNEFYDFNTNIDSQFRLIPGAFPEENIQEIYKEETKKDLHDLRNPYYIYGNPEYIGNKIIYNNDIQNLFLKVKLNMDKHHEDSRHLIHEHQYNLED
Ga0211659_100003935	F072426	N/A	MNTKPRLVDPNWFPKPKPKTIKKIIPTNADNSLIINIIGFLILIIGLLCIYQRYLDKEKKDIETQNKIIELNEYVKRNIK
Ga0211659_100003936	F059124	N/A	MLNFDENLITSIIIYLGACYVLYNYKSEKMFDESGNFKTFGLNKDETIFPFWLITSLIGISCYYFLVSRNNNDINTFF