Scaffold Ga0211659_10000173

Overview

Basic Information

• Taxon OID: 3300020404
• Scaffold ID: Ga0211659_10000173
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36003
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (36.96%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007002	Metagenome	360	N
F087292	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_1000017323	F087292	AGG	MNCQHYFKKLDKFAVCAFKADKGFLEIEPFSESCGIYHYVFYGSAKIGKPFQSEFEIVNKGDFFDMKNYLHQPRLYEALEDFYVWGFNTFGEEEWDARLLTNETLKVEGDSVLICLDGKPVVNDKTLRRFDYSELSTEKSYDVKLGDGVIALFTRSK
Ga0211659_1000017325	F007002	N/A	MNDTYLTILNSYGDIVELDYQFDVPLIINELKSIDKWMDGSNNKKGLTLTGSVDDLELTKRNDCSINDNLKKCPSLIDFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNIVELKAGRAYLLNTKKQHGSFAMVDDIYHILIGIYINPHNFKVVTNLLTNCIDHE