Scaffold Ga0211532_10328517

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10328517
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 585
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_103285172	F022555	AGGAG	MAIAPKFKPGQLVKYNHPANPLVGLVKSVKDYSVGPTLVLVQWCGKYRQQEEYIYQRDLKLVEAV
Ga0211532_103285173	F006383	GGAGG	MRDKMWEVQQPGTLLRARSSHQYGRLALVLEEAYAGPMPSNGYPPRKYVKMQWISTGERFEEMLVNAHNCFDIVSSCDTLGAEEN