Scaffold Ga0211532_10167817

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10167817
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 891
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_101678171	F018286	N/A	SFDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGKVFYVVKLHDNKDAVIICQEDAKSGRESERVD
Ga0211532_101678172	F079212	GAGG	VEENQKELIDRCIESHYNMIRYHRRAIIELSRKMLKESEICMECFDIEIINESGRSGKV
Ga0211532_101678174	F070089	GGAG	VKVGDLVKYESVLNDSMDRHTVEYGLVIQISKTGHDTLSAQVLFNDTGKPCWIDSQKLVVVSEAG