Scaffold Ga0211532_10132488

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10132488
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1036
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F012166	Metagenome	283	Y
F015027	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_101324882	F012166	GAG	MAELANSGVFFEHKLTPEQKLWKAVLSQGVYEACSKKAQALPLTYGEMRSALEWIDLNNRDFCTVCIFAGYDPRYIYRKAKDRVNKWMPNGA
Ga0211532_101324883	F005105	GGA	MVRRICDGCAGNGYRRIWKDQHEREKITIQCSKCESSGEIEDEDFTYDYSGIDHDTLQ
Ga0211532_101324885	F015027	GAG	MQNKEPMTEHEEYKNADVPVDIWIQRNEYLHKHIDKLNEEIHQLRTDNKRLTKQVEDQLKQFRNEGAL