Scaffold Ga0211532_10050196

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10050196
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1967
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010460	Metagenome	303	Y
F103392	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_100501966	F010460	AGGAG	MSNTVPTHEMIKNLADYIVNGMSFQELTQFVYDDVCSIMLEDVEAFHANLESLGYEAEDFTNESYGVEDE
Ga0211532_100501967	F103392	AGGAG	VAKVIIELEFAKCERKVLNCDVYDYLEDLIEDESLDYTVYDGDETYGVLDYQEIEDE