NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211532_10044576

Scaffold Ga0211532_10044576


Overview

Basic Information
Taxon OID3300020403 Open in IMG/M
Scaffold IDGa0211532_10044576 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2136
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.5679Long. (o)66.4581Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008210Metagenome / Metatranscriptome337Y
F066837Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211532_100445763F008210N/AMAVTVNVLKLTQVQGVVSVRGTADTGTIDISSTLKKSTETQSSPTVNINGLHWTLSSGASAKVQRNSVVLYELMESGSLDMYGYSDNSENTSDIEIVIAGGAGGTVIVDCAKISGYGSQQHQDAPLDTNDSGNVYNGGSLG
Ga0211532_100445765F066837GGAGMAETDRTKEVNDLVSDIIAGNSADAQEKFNDQMNSRAQSAVDDMKSGIATDVFNKHIVDPDMEPQGVALDDALVDIDTTTGRPVEEPEQGETNEDI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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