Scaffold Ga0211532

Basic Information
Taxon OID	3300020403 Open in IMG/M
Scaffold ID	Ga0211532_10018056 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020403 Open in IMG/M

Scaffold ID

Ga0211532_10018056 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4000
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4000

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_039
Coordinates	Lat. (^o)	18.5679	Long. (^o)	66.4581	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_039

Coordinates

Lat. (^o)

18.5679

Long. (^o)

66.4581

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F012129	Metagenome / Metatranscriptome	283	Y
F093868	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_100180561	F093868	N/A	MNKIKQFFKKIEDFLYDLYEFDKHMKKVVLLLLLPVFSFGQLTSSGDGIDVDLVFAGTTADANKPLNKVQVNDTIVVKLQLDNLSQKSITYVHVDVQYNINAYQRVDYTFNVPTGAQTSNGNWSGNGMKWSPNPNYDLNDLWAQWSTQGGSYQQVAGWEVDHVEAVSLSGITGNYATLYFKVKDAGSSHNYTDNIIITMARVTDNSSGTEYVFPVGKVRGYDTMAITHIPLEDLDSNIYIKADFNQNFDVTKVGVVVQKNGTPVSNNLYFDSGGQINVTEYITSTTDNYTLDFVTSYNATEWEALLDNVITISDVTLTLNELGQYGHGNAGNVFTTGIQYSAVDSDNNRDLTPQDAYNLLGHVMGSVDIIPDDGTGIFNNSFNPIKKADYDSWSIYKFKNNVAEPNHSVVQPITVDFNQSTYTENFKFGFIGDANGSHSSPVEGNAASSLTARSNNNYTVS
Ga0211532_100180565	F012129	N/A	MQKDPLNNLKQSLDQLLQTDTSIKRRNKKEFEQKRDLFINIINQFEHSITKSFLIEKDYKIDLSKYEENFHQIIDSLILLAFGKEVYELLAFYFYERHNPDGSQNGLIIEETGEELFIKDPMELWELIVKVNPKIFDGKG
Ga0211532_100180567	F009463	N/A	YLNEDYTKDVNIDDPSKLYDPVNENNDILKYNTTIDGRKYKVSFDVNKNPTKRGIKVKFFPLDESGNEVENPSPEQLAQLQNDVATRLAPKFNEFKLEFDEDQDAPEKNVAAFQVPLSSFVSFIANVVFKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211532_10018056

Overview

Ecosystem & Geography

Associated Families

Sequences