Scaffold Ga0211532_10013804

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10013804
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4814
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_100138043	F018815	N/A	MNISLEKVSDFFKPFLLQDIVIKTNKKVLKKGKFKIFQVKQYYINLTLEINGVNKNYEIPYPFKVNYEDDIGILNYHLSSFIPKKQMTRVKFLDSSSKSKLYDNLVYILPSDGTNLK
Ga0211532_100138044	F018622	N/A	MIVQKATLDTLLSNNVLEVRFPRRIVKPGLAATRRMLCTNSLNLLNSVNGRISLNYFAPKGPRKQYLGPDNLSVAWDLLMQDYRNINCNQVDVIQEIPANEDFWIYFNENIYPLTKQQKFNFMNS
Ga0211532_100138045	F014794	N/A	MAMASIDNLAPTKSLIDLTQKDKGDFGLDDYDLDFIFDDILLVEYVDETDEGDEVIRNGIVVPTNALTKAWRKGRVVLAGPDTKHAKVGDIVIFPNNMGVTISNITISGGKKVNKAIFLNEERMFGICKPKDDSTKSNS
Ga0211532_100138046	F008105	N/A	MNFFQLQNKLFYSKKENAGELDSEGEQAFVPFLFNRWLSFYSKELPGFVNETLNKFGNIFDDKQETYKLYYYLIPRLKWQRISYIKKKKKEEDEVEGLSSIAKNKNISKREMLQYVELQKSLRK