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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020403 Open in IMG/M |
| Scaffold ID | Ga0211532_10004059 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10530 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_039 | |||||||
| Coordinates | Lat. (o) | 18.5679 | Long. (o) | 66.4581 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042905 | Metagenome / Metatranscriptome | 157 | N |
| F042906 | Metagenome / Metatranscriptome | 157 | Y |
| F052547 | Metagenome / Metatranscriptome | 142 | N |
| F077304 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211532_100040593 | F042905 | AGAAGG | MILKLNNTYAGYYNYDPEHSPINQDFLRTEVNLDILHGCDQMCPGCFIPRKNLTNADQLKDLYELLSNGHYYPDEIVIGPTDIFDAQNFEEIINHEYMLKLFEISAIGFTSTLLQPYWVVKEKLDKIWALYRHTKRIPDIDFKIVLDVNKYLDGELDDWYKKLKLFEHGSVQFRVNYYKGVFDRISYNDLCEKTFEDFNAPVVITPSFLTDRNARGKVSQHLANFREDLLNQNIDEKWRNYYTFFDAKFNGLGCQNYSYYNGKLYINPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEFMMSCAERNVHMYMESRDLNSCVAIKEYMHASH |
| Ga0211532_100040594 | F042906 | GAG | MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDENQIRKAEAFIESITDHGILVDEILIGPTDFLASENFYEVMPQLEYIINENSPILAFVSTLIDGDIVRFCDWITRRINTDTEIEIGIATNPHKFYEKNYVQHIKDVLKYIDENLEHEVTYTFVVNIKDYGLDYSALHDQAVKEFNTILDFIPSVSRSHKSNIILATLDKFNEYFNVLSKDTKLNNIMVDHSHGGMNYQVLNYKKGEWFISPFMYENMAIYDDTFKIEKFDDILPIIESQNYLAKGTECENCELYFSCYNRKIILLRDYLGEDRCIAPKENMMRNIDNFNHAAQTMYQWDGYSVENDKKGYRKKFLVTKDNDPELERIKSISYVK |
| Ga0211532_100040596 | F052547 | GAGG | MGIVTNNKQHAQASDDFDLSFSEGHKVKVQFNCEVLSGCEFKCKGCFVNKLGSNVGSFDKLNNAIDLFKNNGYHVSTINIGPTDLFGNNNIISLLNDKVFRECLSKVTTIQFVTTLEHIDLQVIDRLNSIPKRDGFMYDCNIQLQPPVNWADIKEKMSALDLFWDDLNYYFVYNMGNDDEYNEQVLDMSRVVDKVFDSILTLNPSFFRAEKSKVHKHLIEKWKKYDFSDDLYPKTIVDQAQGGSLELNYTYCNDRFFWTPFIYDIALIGTEEFEVKDPTDLNSWEEPKTNMFTQQLMYETENCTGCPNQMTCIDKGVLSYMQHHSLTACVFPGIVADN |
| Ga0211532_100040597 | F077304 | GAG | LENFDFTKAILEPKRPNIGEIELTLFENCHLNCIFCHHDKKSTVGLSREGIFSKIPLVEDHVKKMVGMVKVCQINMVGGELFQDRISHWAYDVYYDMLIEIKKIYDKYDMEIKVVWVTSFQFNKQERVQKLLDDLNKAGIPSYIICSYDFDGRPVKGPYGRNIEYFADYITSINMVATVPSIERFMADDDEYFHYLYSKFDNFYFDDYIPDKGFDHLIPSDSQYLDFLKFVYHNYPDINPMADLIENESNHMHCMALNKVTIFPDNSISNCRWNRYTKSDFNTPLNRGDNASMMQAYMDEHGCLSCKWWDKCGFRCYTQWDWKNRERDLPDCVMRMWFNYQLQYQETHRRLESDVAYN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |