Scaffold Ga0211532_10003803

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10003803
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10952
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017223	Metagenome	242	Y
F026716	Metagenome	197	Y
F033597	Metagenome	177	Y
F066235	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_1000380313	F066235	N/A	MEEEDHNSAEDEELRDMVEKALKDNLKSRKSFKKRKDLANRLANILCEYLDSYILLGYDFSGKHLDIKAASTPQQKEALNSFLMKYFASEIQSIKGTDELL
Ga0211532_1000380314	F026716	AGG	MNCSKKEIYAVQTGDYAGQMFAIVEINKDDIGCLSLPEMKNVKVPKESFDSGRNNDIISLVEKLPKNIFKVVQSQYFKNENSDNRRQQFNTPNVLYSKDSVEEKR
Ga0211532_1000380316	F017223	N/A	MISLPEDFVILKFFELGYYPKYNKFNNVYQCSCPICKEGKSLGKKRRCYYIPKNENIFCHNCGWSGKPLRWIKEVSNCSDTDVINELKEYVPDAEDVIVNREETRPTIQVETLPKDSINLSDEFQLDYYNNNSVVTAVRYLIKERRLDTAVNKPDNLYVSLTDRVHKNRLVIPFINENKDIEFYQTRTVLNKDNKTKPKYLGKVQAEKTLFNIDRVSNDHDKVYIFEGPLNAFFTKNSIAVAGITERGKSFTQRQEQQLNYLKWYDKVWILDSQWVDQASLVKSEALLKQKEKVFIWPEKFGKRFKDFNDIAMACKIDEIKWEFIQKNTFDGLEGIVKLSEIKKYRNQIKRV
Ga0211532_1000380317	F033597	N/A	ADSIDSQISSRMEDFLDYLNGEEAGSIQQQLANAEPDTIFDRMKASEQRKLARVATELAGVTESFKGYLAQTGNPSFKHV