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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020403 Open in IMG/M |
| Scaffold ID | Ga0211532_10003784 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10980 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (58.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_039 | |||||||
| Coordinates | Lat. (o) | 18.5679 | Long. (o) | 66.4581 | Alt. (m) | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002282 | Metagenome | 575 | Y |
| F007721 | Metagenome / Metatranscriptome | 346 | N |
| F022521 | Metagenome | 214 | Y |
| F069445 | Metagenome | 124 | Y |
| F091888 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211532_1000378413 | F069445 | AGGAG | MKKEQWDGKSRPANDLYRKNFNEIFGKKPSTDLKGTIICKAKKCNNYLYKNESTSLPGYCWECG |
| Ga0211532_1000378418 | F002282 | N/A | MMSEADIKEYHDLLEKLELLKKKGTPVDDRGPADLTKQIEVLEFRNKKLHAYNEKLIEEVRSLRSKLYIKEN |
| Ga0211532_1000378420 | F091888 | AGGAGG | MKYTLVRRVTFSHANDCVSVVKEADSMEQVLKYKVGAEMLEEKGSKVQFEILININDVFTYINSKDEKPLLLTDEVPDTQAS |
| Ga0211532_100037844 | F022521 | AGGA | MSLLVHYQNLKHFDADKDQWLGEKGQNAIDLKKQADTLGWLMMSIGVYEITEKTVEEMLFRTKFLDFCWGGRSYFVGDPSNTDLRQLFKNHIGLRIAVTNRGLKNISTRHKFMVAQLNNIEERIMKQINN |
| Ga0211532_100037846 | F007721 | AGGAG | VGGTHPLKREEHVGGSHPYKKIKIFFFLGLDTYPIITYKQIITINERNTVMKPIRSNELEFFKELVKDKFHDKEEAVRSEIHLEADKLAEKRKASFPKECGVDKQLNQLRKVNKEYVDFIRTKAVVEQRLKDKVNAVAEEISSRLNRLAKTRNWHDSFDNFNAKEDGVEYFTNKLDDMCFAEAEKHIKKGHKIYNSLKEKRDNCKVIIHTGSDINSTVKTLQKEMASADIRLAIPEQLLQIAVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |