NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211532_10002825

Scaffold Ga0211532_10002825


Overview

Basic Information
Taxon OID3300020403 Open in IMG/M
Scaffold IDGa0211532_10002825 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12917
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.5679Long. (o)66.4581Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022417Metagenome / Metatranscriptome214N
F028777Metagenome / Metatranscriptome190Y
F039398Metagenome / Metatranscriptome164N
F057387Metagenome / Metatranscriptome136Y
F089558Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211532_1000282512F022417AGGAGGMAQMPKFLEDYTTVDELISKMNKEYPESRLISEMVGYGDDWVIFKSSFYETKEDAEPKAVAYAKQTSKDHNSWFEMANTKANGRTLRIVFSESTLAEEMIGIAPSKDAAPKKITLDQKVKELEAEGLVEDITDSKQAIMNNIKEFAMEITNQDLDKARAFTAQALGALGMSKTEVSFANMQSVKNKIQDIATEARTHVDKGE
Ga0211532_1000282513F028777AGGAGMLGLFARNKHSHTEILFIEKDISEFRKIRYILEVEGKICSLDPEFSTSGNLRKAVHRLNRDYNCKIYKEVCNCDFKAKGKLNMDGTPRKHYAYIKDWAS
Ga0211532_1000282516F057387GGAMSKLSKPLQAFWNNQIANDNIKAAPFSGNCMFCTKEITEQDEDHSVCNTCWADLGDDE
Ga0211532_1000282520F039398GAGGMEYAADDINIGYMTCLMFINSEHTLIDKLNNITEIQPNRSHAVFTHITEIHQGGVSFDLITKSMPTYVKITMNYNGNFDILTRTTKGQTEFKDETVETLINFLHIFYVNMVDDENKLLLNALDKNTYRKAAKTMHYREMFGDDAAI
Ga0211532_100028255F089558AGGAGGMKSLTQYSEQQGKKPTGQFAATRYILDNPEARAIFLKVAKEAEQEYLSDTVAAQYLVDNYKQFEHLNYNTVRRYFKDYRDGRIK
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