Scaffold Ga0211532_10001423

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10001423
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17974
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002333	Metagenome	569	Y
F008128	Metagenome / Metatranscriptome	338	Y
F073444	Metagenome / Metatranscriptome	120	Y
F087064	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_1000142310	F073444	AGGA	MIGHQQAVKDFDLQIEMNDLEMNMLQDGDEILPYNISKADDLEQKKLKLLSGKRYHQNAANAYWYYLAKSGK
Ga0211532_1000142313	F002333	N/A	MSVQERLALNEAQSMIYSRSNIRRAFPDFDDCDVASIHLQNENCIVTYNDGTSTNFSKAAIKKAFQNFTYRLKDFFAYLGPNYRGPSVWHDNAYILFKGWTYSHALGHLSSNAQLQHRWADKFIHLSDASKVTTLLQSDQTDLGYLIAPDGFRLPDKPIDLDRDLDDEDEQQPMYGEPCCSCGSFKRQLNNLSDFQKEIEGFKPSCIHLTWFAKYRELLSKRTEVRNNSPSGTPAKCVAWWYAPPSDHLSNGRFILLHTKSGAQAPLSHWRTYKPNEVLTQNDAWDLFFNMMEAGYTPFPGTSLPQLKNAFKK
Ga0211532_1000142327	F087064	N/A	MKPQYAYKVGDRVAERPKAHGIVTARSEVRKEIAKYRSQRYGTVVELTKKPDKLGRNHNFLVIKWDHLKSPTEHAQMRICPIEELDKLQSNGYGTEV
Ga0211532_100014238	F008128	AGG	MKPVAVPKLMLSFSVDLEVEYNSFDGKTTEEMADALQDDLHELLFELSPNVKGVFTSYKTVKIDD