Scaffold Ga0211532_10001031

Overview

Basic Information

• Taxon OID: 3300020403
• Scaffold ID: Ga0211532_10001031
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20743
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.5679
  • Long. (^o): 66.4581
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_1000103126	F020020	N/A	MKKYIVEFTHADGTVEEVELTTDRIQWSIDQWSRNRAVTDYKIISEGSSRSKKMLFG
Ga0211532_1000103127	F001222	GGA	MKKLENLVNQVISEATKINFAGHSFLLKTDTNEDPQKKGVKVQFVPTEFGALSPTEQNDIAIELEERLEKGLAEYDLRVERDRNLKDKTIIGFFIYIEYFDKLIRKALSTNNPNADLDDSEELGS
Ga0211532_1000103128	F003188	N/A	MTQKSLDPRKKLREVLFSIHPLSYRIRQLGLDKETMNKKLFVEILKQLRKIEDRRDFMAEEIGMDMTTYEDQFFRVIEDLMKMCFNKEQLALIQMYLYQLVPDKEWDGTITVSNNKSKKDEVVPFKTPNDVWNVINKFD