Scaffold Ga0211499_10319959

Overview

Basic Information

• Taxon OID: 3300020402
• Scaffold ID: Ga0211499_10319959
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000609 (ERX555971-ERR599057)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 540
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_056
• Coordinates
  • Lat. (^o): -15.331
  • Long. (^o): 43.2908
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211499_103199592	F008590	GGAGG	MQVGDLVTYYFQRPRWLKGQSVHVGLIVETGKYTGNRDVKVLWNDKTEPETEGSQHLTLVDNISLTT
Ga0211499_103199593	F054844	AGG	MKGRDMLKVGTLVRWRGSVGLVMGACKKRWAKDDDVWVMWNDEPKPKIESSRFLEVLNAS