Scaffold Ga0211499_10098356

Overview

Basic Information

• Taxon OID: 3300020402
• Scaffold ID: Ga0211499_10098356
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000609 (ERX555971-ERR599057)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1087
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_056
• Coordinates
  • Lat. (^o): -15.331
  • Long. (^o): 43.2908
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042384	Metagenome	158	Y
F049043	Metagenome	147	Y
F056677	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211499_100983561	F056677	AGGAG	MDIYRNQERELKLAKKPLIVLEDELWQINQLSRLRKDLRNRKKRLEKVIAVKRLALQAVQEKIEREVANEKK
Ga0211499_100983562	F049043	GAGG	MKRNNIEEMHKQMFLLVNLLKKDGHDPLAIAGCMLAGAVQIYQTELGEDTTFQLLDQIANGGDDDFDIDESVDKETIH
Ga0211499_100983563	F042384	AGGAG	MGLMPVYYTTTKLSGKRKSSVRNQRLNKEHEKWLRSMGIDKPFRPKSEPLKISAKKTERYQSVGNGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSKEDAKDESTGKRR