Scaffold Ga0211617_10121556

Overview

Basic Information

• Taxon OID: 3300020401
• Scaffold ID: Ga0211617_10121556
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1089
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001205	Metagenome / Metatranscriptome	748	Y
F029152	Metagenome / Metatranscriptome	189	Y
F055651	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_101215561	F055651	AGGA	MDRYRVIEKFAKENSWSHGLELGVWVGITTFWLMKNTNLKMTCIDAWEV
Ga0211617_101215562	F001205	N/A	MFENVLGTWPKHERFILTSCDDKYFNQYFPRFYKTFDQHWQLPIHVHVIDPQEQSFAKLEHLGLSYTYCYTDSKILKWPYSFETYCQAQRFIILGHHMTKGQSVIVADVDCYALRKPTKQQLDILQSDMAFTEYNKRLMATFCNFHYRRKQHAKKAAVRMKDLIQNTDTIGVDQLVLKEVFGKFHYNNLIHRQWIRHHDVKTEHDLELHNKCLIYHEKGTRGKQKGIKVSWTDIGL
Ga0211617_101215563	F029152	N/A	TDATDFEAVANKAKRDSRIDTANYDRLTVEQQILESAKQLGITTANRTLQSVSGRLLNNMNQHDRDEIANRLDLNESANTLT