Scaffold Ga0211617_10031048

Overview

Basic Information

• Taxon OID: 3300020401
• Scaffold ID: Ga0211617_10031048
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2269
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F029123	Metagenome	189	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_100310484	F103094	AGGAG	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGLNDDRSTTVSH
Ga0211617_100310485	F006217	AGGA	MIDLLLSVIEEPNQIHKYCMDKHDHWTGRAACVQELQHAQRKLEVEELRQFLKENPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKQKRSKC
Ga0211617_100310486	F029123	AGGAG	MSYEVWFGQNGNWFGYHSFKYKMDAQRYEERYQTVFPNLTVEIRERQHGSYS
Ga0211617_100310488	F015102	GGA	MLMSEENDDAEDKNAPFDDVTHWVGNLPRKDTDRPKRVTKRSTWRKIKSNFFSQELGVEKKPKD