Scaffold Ga0211617_10028515

Overview

Basic Information

• Taxon OID: 3300020401
• Scaffold ID: Ga0211617_10028515
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2379
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F002192	Metagenome / Metatranscriptome	585	Y
F059061	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_100285152	F002192	N/A	MHQLLLYTSFFIALFALFFGLYACGRVAKIQTAVKDLDWDAVANMTGDLATTKRTIQTLNNRINGMHSPKLQEQELMLQLLQQQGQKQNGKIIGG
Ga0211617_100285154	F000613	AGGAG	MPLVKKKISIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTAGAPGADTTMDFTVNNAEFAKNASVSTLVTGEPFGWNGNYVQNDMVTTGQVRNRPIITFTNGTASTVNVEVAVFIGG
Ga0211617_100285155	F059061	N/A	GGGRTTTSTQGPAVTTVTNVGAQESRGSGTIDAGAGALLPGLISGARNLLKTPGGQLALGGGIGLATSMVGPDGKKMRITRKMKSQARTVLNIAGGNISVAADILNISDEMLITILLKRFRNDGPVVTKAALRKTKSTIRRLHNMQDVLKSITPTAAGRRRAPMKRAMSTTLIKN