Scaffold Ga0211617_10005928

Overview

Basic Information

• Taxon OID: 3300020401
• Scaffold ID: Ga0211617_10005928
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5615
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043887	Metagenome	155	Y
F057293	Metagenome	136	Y
F060050	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_100059282	F043887	GGAG	MDESTILKIAKYKCQLAELERQWWFEDLDNKFYKINVKRIETELRRLEND
Ga0211617_100059288	F057293	N/A	MRKINITVYVNDECSLYEILNEVRSEIDRKVFDRDNIRQRKFTGTWEVEKDISSPLWPYRWKYETVAKWESNVVPNKEFIQFQKDTK
Ga0211617_100059289	F060050	GGAGG	MTDTQKLERLDYLSSLPYRDHTSEMWDEELALECELQNHPLYKSYPDQ