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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020401 Open in IMG/M |
| Scaffold ID | Ga0211617_10005694 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5739 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_052 | |||||||
| Coordinates | Lat. (o) | -17.2387 | Long. (o) | 53.9775 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001222 | Metagenome / Metatranscriptome | 743 | Y |
| F003188 | Metagenome / Metatranscriptome | 502 | Y |
| F020020 | Metagenome / Metatranscriptome | 226 | Y |
| F041866 | Metagenome / Metatranscriptome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211617_100056941 | F003188 | N/A | MAQKSIHPNKKLREVLYSIHPLSYRIKKITIDQETMQKKLFIEIMNMLRKIEERRDFMQEEIGMDMTTYEDQFFSVIENLMKMHFNKEQLALIQMYLYQLVPDKEWDGKITISINKKEQTVPFKQPIDVWKVINKYSKL |
| Ga0211617_100056942 | F001222 | N/A | MKRLQQLVSQLTEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFDSLSPTERNDIAIELEGRLEQGLDDYELRVERDRNLKDKSIIGFFIYIEYFDKLIRKALGKQNPDTDGTEIDSPE |
| Ga0211617_100056943 | F020020 | N/A | MKKKYIIEFTHSNGEVEVVELVTDRIDWSIDQWKRNRNVIKHEIIEEGSTNNKQMLFG |
| Ga0211617_100056948 | F041866 | GAG | MIDECWHSILQALRSAPDAKVKIKICFNYQTYVEEPTVSSPKRLLEKWDSHPLMQDYTPELVIKTNEDPFYNIADWRREVYDPEAKYTVWGESDTILPRDFFAILNMVEIDQPHVLTFAGRPMWDNSWDVVTHEKLLGWDKPCECKPHKDDCIELLDAPFKYKDYINQEQLDKFNDESGDIKIKQVPHKIDGSLVCISKGHKTPFIAPDMHFVREDTCFEYVCRKRNIPQVCVTTRLKGHNYWHPQKRSGTNASRNDEVFKKYAEQSQVAMAKFLNEL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |