Scaffold Ga0211617_10005406

Overview

Basic Information

• Taxon OID: 3300020401
• Scaffold ID: Ga0211617_10005406
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5898
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016204	Metagenome	249	Y
F032075	Metagenome / Metatranscriptome	181	Y
F037474	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_1000540610	F037474	AGGAGG	MKKSYSWQEIAEMPLCCICCGSRDVDTTTDTCLSCGSTDGLWADERTNKEYEESL
Ga0211617_1000540613	F032075	AGGAG	MKLHYTKYQENYKNYILACLDNEDALIGKNLSREEKIKYLFNRFNSEYGWKIGRTKQDTKQSVIAEWLSGLAINIPYCNYDIIQLAKNMGSVNNDLTNTQEDRICENYWNFMAFMILKLEEELEEEAA
Ga0211617_100054069	F016204	AGGAG	MKNMYGELNVNVLDIKFYVCDEDGNELTNEDGSIKEFYCKGRLKPLEYLCEDMTMQDLVEVKNVY