Scaffold Ga0211617_10003818

Overview

Basic Information

• Taxon OID: 3300020401
• Scaffold ID: Ga0211617_10003818
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7090
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F017285	Metagenome	241	Y
F026439	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_1000381815	F017285	AGGAG	MSFSGTVTCSHCYRQGHNKRKCPALSERIKNEYTGAMLMAKESEEKGNEHDAQWYAERAEVKRQEYIKRTKIDLATGEKVTNKAAKAERMKKVTCGYCQQRGHTRRTCPHVKVDKQIFIEETRRARIAALETAREVGIGLGSMLPIRSTGYNADGEWRRDILTIRYVKSIEWDSCHANRPNLTVKHVDARKLGAPNQSPYTSQDQIEKLVQANNTALRYADAEGQDLPPSSLIPTLDPPKGWLQPTEQSLALAITQTFPTKGSKHAKQRAWDYAYPSGTIKEIIKDLGLTEHYDHINWS
Ga0211617_100038182	F026439	AGGAG	MASQLDSVILWSDAVEQFTEMILPMVHQQHERDGEPDIVARSEAWNNYVDALHSDEVISDWQVANWEHPDCCND
Ga0211617_100038185	F008590	GAGG	MKVGDLVTYHFQLPRWRKGLSVHVGLIVETGKYTGNRDVKVLWNDKTEPETEGSQHLTLVDNISLTT
Ga0211617_100038188	F009562	AGGAG	MLAIPLIRTDDGDNLTPIERTTIGLDAVITALMMQGTLMDPAISDQEAETFTTLSVATIIPAEA