Scaffold Ga0211617_10001126

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211617_10001126

Scaffold Ga0211617_10001126

Overview

Basic Information
Taxon OID	3300020401 Open in IMG/M
Scaffold ID	Ga0211617_10001126 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13697
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (61.54%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_052
Coordinates	Lat. (^o)	-17.2387	Long. (^o)	53.9775	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019158	Metagenome	231	Y
F059942	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211617_100011262	F019158	N/A	MTIVIDSDDREGIEAALKVARIMHTKYVGHSNIHKESFGKIEFIKLLRKYMRESIGHLYDEHSDQVNDMDDMTNLRNAKRFADRIWNGER
Ga0211617_100011267	F059942	GAGG	VRVGDLISFKPIGFGTDDWSNPSIVLKQYESPDDDLFIVWVDGMTAIIDNDNYEIAFLTS

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