NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10000214

Scaffold Ga0211617_10000214


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10000214 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34004
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (80.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056738Metagenome / Metatranscriptome137N
F096775Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211617_1000021433F056738GGTGGMSTTTNTTKIQKLYHFTHNITGKKYLGQTTRDLNVYNGSSKSWLEHLEKYGNDYSTDILFESDDQKRFKEVCKHYSEKFDIINNPDYFNLVAEYGGSLGGKANPSYKTGKYVGRLDDPELYKKLDRQKHAETWEAKRKHTHPRMNFYYHKRMGNKQRAEYYWNKWYKMAPKKSKNRQAIWSTDTFEMWYNRKGNDLDFRHKYTI
Ga0211617_1000021454F096775AGTAGMELLIKAIIGGVVIATVSTVSEKYPTIGAFILGIPLASLVSFTFLYYAGVDIQTFRTLSIQTVYFVLISLIFFPIFIYLLPTYGFWIAISIGTVLTGSLMFGLFRYL
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