Scaffold Ga0211636_10113217

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211636_10113217

Scaffold Ga0211636_10113217

Overview

Basic Information
Taxon OID	3300020400 Open in IMG/M
Scaffold ID	Ga0211636_10113217 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1090
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_122
Coordinates	Lat. (^o)	-8.9721	Long. (^o)	-139.2742	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035330	Metagenome / Metatranscriptome	172	Y
F067815	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211636_101132171	F035330	AGGA	MLNKGTKFFVTWTPEFINGEENFHGQSVSRKGLWDEKSKIAINKKTGKKYMTFWDRDRERYTTANSEIVSITYNIFQKGTYEKSK
Ga0211636_101132172	F067815	N/A	MKGEIKMENTHSTFLVLRISEDKDNGNTDIDVVESFVTMRDAKNYKDAKDLIERLSPRNTWRHTQYKIQQIFYKSFVQDEKKSWKDFVSA

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