NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211636_10092274

Scaffold Ga0211636_10092274


Overview

Basic Information
Taxon OID3300020400 Open in IMG/M
Scaffold IDGa0211636_10092274 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1232
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9721Long. (o)-139.2742Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003188Metagenome / Metatranscriptome502Y
F020020Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0211636_100922742F020020N/AMKKKYLIEFTHSNGEKEVVELVTDRLDWSIDQWKRNRNVIKHEIIEEGSTNTKQMLFG
Ga0211636_100922744F003188N/ALVTKIQTLMAKSTHPNKRLREVLFSIHPLSYRIRKKTIDKDTMQKKLFIECLNMLRKIEDRRDFMQEEIGIDMTTYEDQFFSVIENLMKMHFGKEQLALIQMYLYQLVPDKEWDGMITINVNKKETTVPFRKPMDVWKVISRYNK

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