NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211636_10071240

Scaffold Ga0211636_10071240


Overview

Basic Information
Taxon OID3300020400 Open in IMG/M
Scaffold IDGa0211636_10071240 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1440
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9721Long. (o)-139.2742Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016883Metagenome244N
F055781Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0211636_100712401F055781N/AWNKNVKTIHPVALSDYVNKNKKQSYDNLPPKYKFDGDFDVVQSYYPYQHKLKLDEDIEFDQTYEAKAWDWMVKNIKPSKKVLFWDVGIKEYDLEYIEPINWHKSEYEKIIDREQRRKHQQIEHNFF
Ga0211636_100712402F016883GAGLIENKEENTNKSNTTFSKAWLEKKIMCGLCNFGCCNHKSFHVEITEQEQEKYRKKFGLDLELEWSQNGCCDLLSDDGSGCSLGDERPVFCKMYPLEPNKTGRIVLGNWSYLHCPKPQDYELDRIEDGKYHYKLIKPHKNKRDELILEDDIQNVVKEIWRQSKEALVDTYGEEFYERIKIEMKQTIKHEFF
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