Scaffold Ga0211636_10025445

Overview

Basic Information

• Taxon OID: 3300020400
• Scaffold ID: Ga0211636_10025445
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2658
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9721
  • Long. (^o): -139.2742
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018810	Metagenome / Metatranscriptome	233	Y
F052545	Metagenome / Metatranscriptome	142	Y
F071138	Metagenome / Metatranscriptome	122	N
F080495	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211636_100254452	F018810	AGGA	MVDPQAPIVKLGTKLKKGVVTGIFHGKIEVLGESGVQTLSFTTVEKEVLSNG
Ga0211636_100254455	F080495	AGGA	MKEALILILAFLAGCMLIGCRQPVRNYRIATGSPDIWAAQPKQKVEFTVEWKQ
Ga0211636_100254456	F071138	AGGA	MFKVIVSDVECFGKLGYFTTRSVAFGKSPKQAWANLRKRGSHTVSGGHPEGYGGVPVLQMRRLEKDGEMLSEVWD
Ga0211636_100254457	F052545	AGGA	MEKARVWAILFRMSTESSLMIRTPFDPKTFKNSPDDQLDAGAWCLGRMGGSWIPAMFVCGTQSEAEGIKEELLERMQQDE