Scaffold Ga0211636_10012599

Overview

Basic Information

• Taxon OID: 3300020400
• Scaffold ID: Ga0211636_10012599
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4068
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9721
  • Long. (^o): -139.2742
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042384	Metagenome	158	Y
F049043	Metagenome	147	Y
F056677	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211636_1001259910	F056677	AGGAG	MDIYRNQERELKLARKPLIVLEDELWQINQLSRLRKDLRNRKRRLEKVIAVKRLSLQAVQEKIAREGLE
Ga0211636_100125998	F042384	AGGAG	MGLMPVYYTTTKLSGRKKSSVRNQRLNREHEKWLRSMGVDKPWKPKSEPLKISAKKTERYQSVGNGIGNGFVKTTSAISGEYIVGQAYNKGNLVVLSKEDAKDESTGKRR
Ga0211636_100125999	F049043	GAGG	MKKNNIEEMHKQLFLLVNLLRKDGHDPLAIAGCMLAGAVQIYQTELGIETTQDLLDQIANGDDDDFDLSIDKETIH