Scaffold Ga0211636_10000545

Overview

Basic Information

• Taxon OID: 3300020400
• Scaffold ID: Ga0211636_10000545
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26788
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (29.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9721
  • Long. (^o): -139.2742
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F041866	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211636_1000054533	F041866	GAG	MIDECWHSILQALRSAPDVDVKIKICFNYQTYIEEPTVSSARRLLEKWDSHPLMQDYSPELTIKDNDDPFYNIADWRREVYDPEAKYTVWGESDTIIPRDFFAILNMVEIDQPHVLTFAGRPMWDNSWDVVTHERLLGYDKPCQCKPHKDDCIELLESPWKYKDYITQKELDKFNDESGDINIKSVPHKIDGSLVCISSGHKTPFIAPGMHFVREDTCFEYVCRKRNIPQVCVTSRLKGHNYWHPIKRVGTDASRNDEVFKKYAAESQAAMSEFLQNLDK
Ga0211636_1000054539	F001222	N/A	MNKLEQLVKETLNEAAKVNFAGHSFLLKVDTNEDPQKKGVKVQFIPTEFGDLTTTQQNDIAIELEQRLERGLAEFELRVERDRNLKDKSIIGFFIYIEYFDKIIRKALSMQNPTTNAETDEPA
Ga0211636_1000054540	F003188	N/A	MPRQTNPRKKLREVLFSIHPLSYRIKIKELDKESMNKKLFVQIVKQLRKIEDRRDFMAEEIGMDMTTYEDQFFRVIEDLMKMCFSKEQLSLVQMYLYQLVPDKEWDGNITISVGKQEKTVKFKTPSDVWDVIKKYNK