Scaffold Ga0211636_10000315

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211636_10000315

Scaffold Ga0211636_10000315

Overview

Basic Information
Taxon OID	3300020400 Open in IMG/M
Scaffold ID	Ga0211636_10000315 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	35558
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (58.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_122
Coordinates	Lat. (^o)	-8.9721	Long. (^o)	-139.2742	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090880	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211636_100003157	F090880	AGGAG	MSNPTEKDYQQIAEALNNHYGGFEITENHLNNVAILKSYMSDSPSWTGDIALVVHGGGSCFKDILYRIEDKWTWVESMNEGEYNCNKELI

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