Scaffold Ga0211623_10029381

Overview

Basic Information

• Taxon OID: 3300020399
• Scaffold ID: Ga0211623_10029381
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1866
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.056
  • Long. (^o): 4.6606
  • Depth (m): 700

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F077398	Metagenome / Metatranscriptome	117	N
F097505	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211623_100293811	F097505	AGG	MDWKRARKRMHCDCSIHDIVSSVLEYFIITPMFATAYLAVTVPWMLFVIKLDGEQFMDFVWQSVLVDLIVAYPVTKLILKLKPRIEKITS
Ga0211623_100293812	F001235	GAG	VATKLNVDPGSDIGKKLWDRHQANEYTHVNNYKEAICINCFTKDATSATIADICSECAGKRGREPLLATITQKMYGLCFFCGHYKFEIEQINARFCRSCHRKIANVTKEYNKKGGPMGMDPFWIAMRKKMGKDWKIIMSQNLGNKR
Ga0211623_100293813	F077398	AGGAGG	MTVKKSKSKEITKATVKVKEGKVDVYTKAYNDTIKRAGSVYTANFKTIDETIDDIKKMSRKVSTNDYSANNVYLILQDALKKITLAEK