Scaffold Ga0211623_10009279

Overview

Basic Information

• Taxon OID: 3300020399
• Scaffold ID: Ga0211623_10009279
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3515
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.056
  • Long. (^o): 4.6606
  • Depth (m): 700

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052655	Metagenome / Metatranscriptome	142	Y
F056674	Metagenome / Metatranscriptome	137	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211623_1000927910	F052655	AGGAG	MTVLILVTGLVLGVFTYQPSWFDTRPHYYHLTYNSKSECQKAREMVKDKGTVCTDKHE
Ga0211623_100092796	F056674	AGGAGG	MDKAARDMLKNNKKKILDEIKKAAGQKITPKHRAYRQMTLGSLIKALQRERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEDPITVAEFLKECEDSVGKSFITADHFDEFYKDYVMQISAPLWVSTLGQASTKGIVDLVPTDGYIKLVTETIEEVEVVEDGSE
Ga0211623_100092799	F105355	GAGG	MEALNSCDENDKLTILLNIRQGTQSTTYSVSNLPDWYDMLGIFAIYGVVAMTIFYSGLWIASKYKGEQK