Scaffold Ga0211623

Basic Information
Taxon OID	3300020399 Open in IMG/M
Scaffold ID	Ga0211623_10000039 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020399 Open in IMG/M

Scaffold ID

Ga0211623_10000039 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	73993
Total Scaffold Genes	94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	80 (85.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

73993

Total Scaffold Genes

94 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

80 (85.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_068
Coordinates	Lat. (^o)	-31.056	Long. (^o)	4.6606	Alt. (m)	Depth (m)	700
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_068

Coordinates

Lat. (^o)

-31.056

Long. (^o)

4.6606

Alt. (m)

Depth (m)

700

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F010167	Metagenome	307	Y
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F036736	Metagenome / Metatranscriptome	169	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211623_1000003943	F010167	GGGGG	MIFAHASLIQEGEAVLFYNFNKPMNGYMIAGLIIVDSVEARLDFAKVWTYFVSEIVQADDIYCSIQLEGEHSMFDNYLTYYDTIDGLKFYKVDNYLKSKYSQYEKHLEEAGT
Ga0211623_1000003952	F048916	N/A	MGILSELAAPVANFGLGLYNADTYYSKECAWYGQVKFSEDTKQWLLQNNPPPIVSEDLAQVAKNNDIYLEVCDPKDTENNE
Ga0211623_1000003953	F002078	AGGAG	MDIAAMFEGQGWFAIAGQIVLVFTAITGSLPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAAPAVEKEIDEAKAKVRDRAGMPDVLDGL
Ga0211623_1000003954	F022754	N/A	VNELAIAILLVIPAPHKMAFWTVNQVPTQVQLIHKSGLEVSYNASPVSCSFRPRNNKEMVFKSSETDCYAVYDLSTPTFIRHPNYWMPVEPPKSLKMNVGD
Ga0211623_1000003955	F013820	AGGAG	MIKTIIQFVDKMMPGHKTYAIMLIGIAMMVCQMMGYHQFDQEAWGVLGIGGAATWKMGQDRKKK
Ga0211623_1000003956	F036736	GGAG	MTDKLNEMLLGGLAIVGTFITKRVFNNHDSLSDRITALEKTVVTKADLNTLERNVEMVLTHLINKGDTPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211623_10000039

Overview

Ecosystem & Geography

Associated Families

Sequences