Scaffold Ga0211637_10013072

Overview

Basic Information

• Taxon OID: 3300020398
• Scaffold ID: Ga0211637_10013072
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.1719
  • Long. (^o): -129.6713
  • Depth (m): 696

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y
F036736	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211637_100130721	F015741	GGA	MQLKQRFGIGLVCLTFWTGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESSPPEIVSEDLSKVSRNNDIYREVCKEHKSMIDKMKDK
Ga0211637_100130722	F002078	AGGAG	MDIATIFEGQGWFAIVGQIVLVFTAVTGALPDRFVQKIPILGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM
Ga0211637_100130723	F022754	N/A	MNELIITIMLVIPSPHKLVNWSVNQIPTQIQIIHETGLEVSYNATPVSCSFKPRHDKEMVFRSPNNRCYSVYDLSSPRFVRHPDYWYKVELPKPPLVNLGE
Ga0211637_100130724	F013820	AGGAG	MVPTIIGFIDKLWPGGKTYALMGLGVLMTICQMGGWHNFSPEAWGLLGLGGAATWKMGADRGKPAVKK
Ga0211637_100130725	F036736	GAGG	MISDKFNEMIIGFFVLVGGFTTKRIFNNHDTLSERVTALEKVVLTKEDINGLERDVSMIVTHLITKGKSDQ